Check out all the research software, including tools and libraries, that the eScience Center has contributed to over the years. Click on the entries to get a full description, the source code, related projects and tools, citation information and much more.
Results
prfmodel
A modern Python implementation for population receptive field modelling.
rcrisp
rcrisp provides tools to automate the morphological delineation of riverside urban areas.
LARA Lab Automation
Open source toolset for lab automation
VU-Lab
This is the configuration and documentation page of the LARA lab automation setup at the VU. It i...
snakemake-storage-plugin-rucio
A Snakemake storage plugin that handles files available through [Rucio](https://rucio.cern.ch/).
Pure3D
A web platform for exploring 3D digital collections and editions in cultural heritage.
Climate Rapid Evaluation Framework
Rapid Evaluation Framework for climate simulations
jaspKinematics
A trajectory analyzer for JASP
jaspModuleTemplate
Template to create a JASP module.
JASP modules app
A web application that allows you to search/filter all the available JASP modules and install them.
Streetscapes explorer frontend
Web application to review and edit segmented street view images.
rocrate-action-recorder
Python package to record calls of Python CLI commands into a Research Object Crate (RO-Crate). S...
swiftmhc
SwiftMHC is a deep learning algorithm for predicting pMHC structure and binding affinity at the s...
QANS
QANS (Questionnaire And Nomination Software) is a collection of software components to enable lon...
ModuleMixins.jl
Make your Julia modules composable! With ModuleMixins you can design larger programs in Julia, bu...
CAExplorer.jl
A widget that lets you explore the dynamics of a particular cellular automaton that operates on a...
CarboKitten.jl
A toolkit for forward modelling of stratigraphic record of carbonate platforms, written in Julia.
document-segementation
Tool for identifying document boundaries and categories from VoC inventories.
Introduction to deep learning lesson
This lesson gives an introduction to deep learning.
Enriching Digital Heritage (pre-workshop)
Software related to the startup phase of the project Enriching Digital Heritage
The Cultural Heritage AI Cookbook: Notebooks
Google Colab notebook that uses large language models for analyzing and expanding text metadata r...
Containers for the KM3NeT Rucio deployment
This repository contains configuration files and scripts to build KM3NeT-specific container image...
Rucio policy package for KM3NeT
Package with custom policies for the Rucio instance of KM3NeT.
Rucio deployment for KM3NeT
This repository contains the Rucio deployment for KM3NeT. It can be used as an example of how to ...
powerfit
Rigid body fitting of atomic strucures in cryo-electron microscopy density maps
protein-detective
Python package to detect proteins in EM density maps.
REE-HDSC
Software developed in the project REE-HDSC (Recognizing Extracted Entities for the Historical Dat...
Annular
Annular is a setup for running coupled energy system models with the aim of modeling flexibility ...
cudawrappers
The cudawrappers library is a C++ wrapper for the Nvidia C libraries such as the CUDA driver, NVR...
PlanEO Dashboard
Provides an interactive interface for visualizing geographical data relevant to the MINE-DD proje...
TulipaClustering.jl
Cluster profiles into representative periods.
TulipaIO.jl
This package relies on DuckDB to tie a variety of data sources with Julia, and TulipaEnergyModel ...
TulipaEnergyModel
This package provides an optimization model for the electricity market and its coupling with othe...
RESTful APE
RESTful API for the APE (Automated Pipeline Explorer) library.
mkdocs rich argparse
An MkDocs plugin to generate documentation for a rich argparse parser. It renders commands, sub c...
Effort Sharing
Analysis and plotting scripts for effort sharing, associated with the Carbon Budget Explorer
Open Matrices Stimulus Set (omss)
omss is a Python package for generating matrix reasoning puzzles, inspired by Raven's Progressive...
Cosimplat
Co-simulation framework made for RESCUE project
KMM
KMM is a lightweight C++ middleware for accelerated computing.
Kernel Float
C++ Header-only library for CUDA that simplifies working with vector types and reduced precision ...
ccglib
The Complex Common GEMM Library (ccglib) provides mixed-precision matrix-matrix multiplication ke...
protein-quest
Python package to search/retrieve/filter proteins and protein structures
visor
The goal of visor is to provide a set of tools for visibility analysis.
rcoins
Identify continuous lines in a spatial network.
seahtrue
Seahtrue processes XF analyzer data on oxygen consumption and acidification from Agilent Wave .xl...
CLASS-web
Implementation of the Chemistry Land-surface Atmosphere Soil Slab (CLASS) model that runs entirel...
Verticox+
Verticox+ is a Cox proportional hazards algorithm for vertically distributed data. The solution ...
H2 scenario preprocessing
Preprocessing script to create a database for the H2 scenario explorer